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bed files
•
reset
2
votes
3
replies
2.4k
views
import.bed fails on bed file with no scores
rtracklayer
import
bed files
8.1 years ago
jmr
• 0
0
votes
7
replies
2.2k
views
Compute average score across multiple bed files
chip-seq
granges
R
bed files
updated 5.8 years ago by
spotifywebplayer
• 0 • written 5.8 years ago by
jinseok
• 0
1
vote
1
reply
1.6k
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
rbronste
▴ 60
0
votes
1
reply
1.3k
views
How to extract non-overlapping genes from a a bed file?
gene density
bed files
gff
7.8 years ago
birdguy.saikat
• 0
0
votes
1
reply
1.1k
views
getReadCountsFromBAM including bed information
cn.mops
bed files
getReadCountsFromBAM
6.9 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
1
reply
1.0k
views
Bioconductor RNA-seq bed file read-in/download then wavelet transform
bed files
wavelet
rna-seq
updated 7.1 years ago by
shepherl
3.9k • written 7.1 years ago by
whgsnp
• 0
0
votes
0
replies
996
views
customproDB: gene fusions
fusion
bed files
gene fusion
bed file
8.2 years ago
ramaniak
• 0
0
votes
0
replies
986
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.3 years ago
linuxborg2
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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